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Browsing A. Department of Biomedical Sciences (2012-present) by Keyword "Bacteriology"

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Browsing A. Department of Biomedical Sciences (2012-present) by Keyword "Bacteriology"

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Title Author(s) Journal Issue Date Type
Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali Senghore, M.; Diarra, B.; Gehre, F.; Otu, J.; Worwui, A.; Muhammad, A. K.; Kwambana-Adams, B.; Kay, G. L.; Sanogo, M.; Baya, B.; Orsega, S.; Doumbia, S.; Diallo, S.; de Jong, B. C.; Pallen, M. J.; Antonio, M. Scientific Reports 2020 Article-E
An African origin for Mycobacterium bovis Loiseau, C.; Menardo, F.; Aseffa, A.; Hailu, E.; Gumi, B.; Ameni, G.; Berg, S.; Rigouts, L.; Robbe-Austerman, S.; Zinsstag, J.; Gagneux, S.; Brites, D. Evolution, Medicine, and Public Health 2020 Article
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region Ngabonziza, J. C. S.; Loiseau, C.; Marceau, M.; Jouet, A.; Menardo, F.; Tzfadia, O.; Antoine, R.; Niyigena, E. B.; Mulders, W.; Fissette, K.; Diels, M.; Gaudin, C.; Duthoy, S.; Ssengooba, W.; Andre, E.; Kaswa, M. K.; Habimana, Y. M.; Brites, D.; Affolabi, D.; Mazarati, J. B.; de Jong, B. C.; Rigouts, L.; Gagneux, S.; Meehan, C. J.; Supply, P. Nature Communications 2020 Article-E
Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension Ofori-Anyinam, B.; Riley, A. J.; Jobarteh, T.; Gitteh, E.; Sarr, B.; Faal-Jawara, T. I.; Rigouts, L.; Senghore, M.; Kehinde, A.; Onyejepu, N.; Antonio, M.; de Jong, B. C.; Gehre, F.; Meehan, C. J. Tuberculosis 2020 Article
High genetic similarity between non-typhoidal Salmonella isolated from paired blood and stool samples of children in the Democratic Republic of the Congo Phoba, M. F.; Barbé, B.; Ley, B.; Van Puyvelde, S.; Post, A.; Mattheus, W.; Deborggraeve, S.; Lunguya, O.; Jacobs, J. PLoS Neglected Tropical Diseases 2020 Article-E
Reference set of Mycobacterium tuberculosis clinical strains: a tool for research and product development Borrell, S.; Trauner, A.; Brites, D.; Rigouts, L.; Loiseau, C.; Coscolla, M.; Niemann, S.; De Jong, B.; Yeboah-Manu, D.; Kato-Maeda, M.; Feldmann, J.; Reinhard, M.; Beisel, C.; Gagneux, S. PLoS ONE 2019 Article-E
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues Meehan, C. J.; Goig, G. A.; Kohl, T. A.; Verboven, L.; Dippenaar, A.; Ezewudo, M.; Farhat, M. R.; Guthrie, J. L.; Laukens, K.; Miotto, P.; Ofori-Anyinam, B.; Dreyer, V.; Supply, P.; Suresh, A.; Utpatel, C.; van Soolingen, D.; Zhou, Y.; Ashton, P. M.; Brites, D.; Cabibbe, A. M.; de Jong, B. C.; De Vos, M.; Menardo, F.; Gagneux, S.; Gao, Q.; Heupink, T. H.; Liu, Q.; Loiseau, C.; Rigouts, L.; Rodwell, T. C.; Tagliani, E.; Walker, T. M.; Warren, R. M.; Zhao, Y.; Zignol, M.; Schito, M.; Gardy, J.; Cirillo, D. M.; Niemann, S.; Comas, I.; Van Rie, A. Nature Reviews Microbiology 2019 Article
How well do routine molecular diagnostics detect rifampicin heteroresistance in Mycobacterium tuberculosis? Ng, K. C. S.; Supply, P.; Cobelens, F. G. J.; Gaudin, C.; Gonzalez-Martin, J.; de Jong, B. C.; Rigouts, L. Journal of Clinical Microbiology 2019 Article-E
Fluoroquinolone heteroresistance in Mycobacterium tuberculosis: detection by genotypic and phenotypic assays in experimentally mixed populations Rigouts, L.; Miotto, P.; Schats, M.; Lempens, P.; Cabibbe, A. M.; Galbiati, S.; Lampasona, V.; De Rijk, P.; Cirillo, D. M.; de Jong, B. C. Scientific Reports 2019 Article-E
Salmonella Typhi, Paratyphi A, Enteritidis and Typhimurium core proteomes reveal differentially expressed proteins linked to the cell surface and pathogenicity Saleh, S.; Van Puyvelde, S.; Staes, A.; Timmerman, E.; Barbé, B.; Jacobs, J.; Gevaert, K.; Deborggraeve, S. PLoS Neglected Tropical Diseases 2019 Article-E
A genome-based species taxonomy of the Lactobacillus genus complex Wittouck, S.; Wuyts, S.; Meehan, C. J.; van Noort, V.; Lebeer, S. mSystems 2019 Article-E
Population genomics and molecular epidemiology of Mycobacterium ulcerans Vandelannoote, K.; Eddyani, M.; Buultjens, A.; Stinear, T. P. 2019 Chapter
Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium Tortoli, E.; Meehan, C. J.; Grottola, A.; Fregni Serpini, G.; Fabio, A.; Trovato, A.; Pecorari, M.; Cirillo, D. M. Infection, Genetics and Evolution 2019 Article-E
Variable ability of rapid tests to detect Mycobacterium tuberculosis rpoB mutations conferring phenotypically occult rifampicin resistance Torrea, G.; Ng, K. C. S.; Van Deun, A.; Andre, E.; Kaisergruber, J.; Ssengooba, W.; Desmaretz, C.; Gabriels, S.; Driesen, M.; Diels, M.; Asnong, S.; Fissette, K.; Gumusboga, M.; Rigouts, L.; Affolabi, D.; Joloba, M.; de Jong, B. C. Scientific Reports 2019 Article-E
Whole genome sequence of Mycobacterium kansasii isolates of the genotype 1 from Brazilian patients with pulmonary disease demonstrates considerable heterogeneity Machado, E.; Vasconcellos, S. E. G.; Cerdeira, C.; Gomes, L. L.; Junqueira, R.; Carvalho, L. D.; Ramos, J. P.; Redner, P.; Campos, C. E. D.; Caldas, P. C. S.; Gomes, A. P. C. S.; Goldenberg, T.; Montes, F. F.; Mello, F. C. Q.; Mussi, V. O.; Lasunskaia, E.; van Soolingen, D.; Miranda, A. B.; Rigouts, L.; de Jong, B. C.; Meehan, C. J.; Catanho, M.; Suffys, P. N. Memorias do Instituto Oswaldo Cruz 2018 Article
Publisher correction: Non-tuberculous Mycobacteria isolated from pulmonary samples in sub-Saharan Africa - a systematic review and meta analyses Okoi, C.; Anderson, S. T. B.; Antonio, M.; Mulwa, S. N.; Gehre, F.; Adetifa, I. M. O. Scientific Reports 2018 Published erratum-E
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches Otchere, I. D.; Coscolla, M.; Sanchez-Buso, L.; Asante-Poku, A.; Brites, D.; Loiseau, C.; Meehan, C.; Osei-Wusu, S.; Forson, A.; Laryea, C.; Yahayah, A. I.; Baddoo, A.; Ansa, G. A.; Aboagye, S. Y.; Asare, P.; Borrell, S.; Gehre, F.; Beckert, P.; Kohl, T. A.; N'dira, S.; Beisel, C.; Antonio, M.; Niemann, S.; de Jong, B. C.; Parkhill, J.; Harris, S. R.; Gagneux, S.; Yeboah-Manu, D. Scientific Reports 2018 Article-E
Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae Benjak, A.; Avanzi, C.; Singh, P.; Loiseau, C.; Girma, S.; Busso, P.; Fontes, A. N. B.; Miyamoto, Y.; Namisato, M.; Bobosha, K.; Salgado, C. G.; da Silva, M. B.; Bouth, R. C.; Frade, M. A. C.; Filho, F. B.; Barreto, J. G.; Nery, J. A. C.; Buhrer-Sekula, S.; Lupien, A.; Al-Samie, A. R.; Al-Qubati, Y.; Alkubati, A. S.; Bretzel, G.; Vera-Cabrera, L.; Sakho, F.; Johnson, C. R.; Kodio, M.; Fomba, A.; Sow, S. O.; Gado, M.; Konate, O.; Stefani, M. M. A.; Penna, G. O.; Suffys, P. N.; Sarno, E. N.; Moraes, M.O.; Rosa, P. S.; Baptista, I. M. F. D.; Spencer, J. S.; Aseffa, A.; Matsuoka, M.; Kai, M.; Cole, S. T. Nature Communications 2018 Article-E
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase Ezewudo, M.; Borens, A.; Chiner-Oms, A.; Miotto, P.; Chindelevitch, L.; Starks, A. M.; Hanna, D.; Liwski, R.; Zignol, M.; Gilpin, C.; Niemann, S.; Kohl, T. A.; Warren, R. M.; Crook, D.; Gagneux, S.; Hoffner, S.; Rodrigues, C.; Comas, I.; Engelthaler, D. M.; Alland, D.; Rigouts, L.; Lange, C.; Dheda, K.; Hasan, R.; McNerney, R.; Cirillo, D. M.; Schito, M.; Rodwell, T. C.; Posey, J. Scientific Reports 2018 Article-E
Mycobacterial biomaterials and resources for researchers Hazbon, M. H.; Rigouts, L.; Schito, M.; Ezewudo, M.; Kudo, T.; Itoh, T.; Ohkuma, M.; Kiss, K.; Wu, L.; Ma, J.; Hamada, M.; Strong, M.; Salfinger, M.; Daley, C. L.; Nick, J. A.; Lee, J. S.; Rastogi, N.; Couvin, D.; Hurtado-Ortiz, R.; Bizet, C.; Suresh, A.; Rodwell, T.; Albertini, A.; Lacourciere, K. A.; Deheer-Graham, A.; Alexander, S.; Russell, J. E.; Bradford, R.; Riojas, M. A. Pathogens and Disease 2018 Article