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Browsing A. Department of Biomedical Sciences (2012-present) by Author "Gagneux, S."

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Browsing A. Department of Biomedical Sciences (2012-present) by Author "Gagneux, S."

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Title Author(s) Journal Issue Date Type
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region Ngabonziza, J. C. S.; Loiseau, C.; Marceau, M.; Jouet, A.; Menardo, F.; Tzfadia, O.; Antoine, R.; Niyigena, E. B.; Mulders, W.; Fissette, K.; Diels, M.; Gaudin, C.; Duthoy, S.; Ssengooba, W.; Andre, E.; Kaswa, M. K.; Habimana, Y. M.; Brites, D.; Affolabi, D.; Mazarati, J. B.; de Jong, B. C.; Rigouts, L.; Gagneux, S.; Meehan, C. J.; Supply, P. Nature Communications 2020 Article-E
An African origin for Mycobacterium bovis Loiseau, C.; Menardo, F.; Aseffa, A.; Hailu, E.; Gumi, B.; Ameni, G.; Berg, S.; Rigouts, L.; Robbe-Austerman, S.; Zinsstag, J.; Gagneux, S.; Brites, D. Evolution, Medicine, and Public Health 2020 Article
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues Meehan, C. J.; Goig, G. A.; Kohl, T. A.; Verboven, L.; Dippenaar, A.; Ezewudo, M.; Farhat, M. R.; Guthrie, J. L.; Laukens, K.; Miotto, P.; Ofori-Anyinam, B.; Dreyer, V.; Supply, P.; Suresh, A.; Utpatel, C.; van Soolingen, D.; Zhou, Y.; Ashton, P. M.; Brites, D.; Cabibbe, A. M.; de Jong, B. C.; De Vos, M.; Menardo, F.; Gagneux, S.; Gao, Q.; Heupink, T. H.; Liu, Q.; Loiseau, C.; Rigouts, L.; Rodwell, T. C.; Tagliani, E.; Walker, T. M.; Warren, R. M.; Zhao, Y.; Zignol, M.; Schito, M.; Gardy, J.; Cirillo, D. M.; Niemann, S.; Comas, I.; Van Rie, A. Nature Reviews Microbiology 2019 Article
Reference set of Mycobacterium tuberculosis clinical strains: a tool for research and product development Borrell, S.; Trauner, A.; Brites, D.; Rigouts, L.; Loiseau, C.; Coscolla, M.; Niemann, S.; De Jong, B.; Yeboah-Manu, D.; Kato-Maeda, M.; Feldmann, J.; Reinhard, M.; Beisel, C.; Gagneux, S. PLoS ONE 2019 Article-E
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase Ezewudo, M.; Borens, A.; Chiner-Oms, A.; Miotto, P.; Chindelevitch, L.; Starks, A. M.; Hanna, D.; Liwski, R.; Zignol, M.; Gilpin, C.; Niemann, S.; Kohl, T. A.; Warren, R. M.; Crook, D.; Gagneux, S.; Hoffner, S.; Rodrigues, C.; Comas, I.; Engelthaler, D. M.; Alland, D.; Rigouts, L.; Lange, C.; Dheda, K.; Hasan, R.; McNerney, R.; Cirillo, D. M.; Schito, M.; Rodwell, T. C.; Posey, J. Scientific Reports 2018 Article-E
Low sensitivity of the MPT64 identification test to detect lineage 5 of the Mycobacterium tuberculosis complex Sanoussi, C. N.; de Jong, B. C.; Odoun, M.; Arekpa, K.; Ali Ligali, M.; Bodi, O.; Harris, S.; Ofori-Anyinam, B.; Yeboah-Manu, D.; Otchere, I. D.; Asante-Poku, A.; Anagonou, S.; Gagneux, S.; Coscolla, M.; Rigouts, L.; Affolabi, D. Journal of Medical Microbiology 2018 Article
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches Otchere, I. D.; Coscolla, M.; Sanchez-Buso, L.; Asante-Poku, A.; Brites, D.; Loiseau, C.; Meehan, C.; Osei-Wusu, S.; Forson, A.; Laryea, C.; Yahayah, A. I.; Baddoo, A.; Ansa, G. A.; Aboagye, S. Y.; Asare, P.; Borrell, S.; Gehre, F.; Beckert, P.; Kohl, T. A.; N'dira, S.; Beisel, C.; Antonio, M.; Niemann, S.; de Jong, B. C.; Parkhill, J.; Harris, S. R.; Gagneux, S.; Yeboah-Manu, D. Scientific Reports 2018 Article-E
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis Miotto, P.; Tessema, B.; Tagliani, E.; Chindelevitch, L.; Starks, A. M.; Emerson, C.; Hanna, D.; Kim, P. S.; Liwski, R.; Zignol, M.; Gilpin, C.; Niemann, S.; Denkinger, C. M.; Fleming, J.; Warren, R. M.; Crook, D.; Posey, J.; Gagneux, S.; Hoffner, S.; Rodrigues, C.; Comas, I.; Engelthaler, D. M.; Murray, M.; Alland, D.; Rigouts, L.; Lange, C.; Dheda, K.; Hasan, R.; Ranganathan, U. D. K.; McNerney, R.; Ezewudo, M.; Cirillo, D. M.; Schito, M.; Koser, C. U.; Rodwell, T. C. European Respiratory Journal 2017 Article
Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum Ofori-Anyinam, B.; Dolganov, G.; Van, T.; Davis, J. L.; Walter, N. D.; Garcia, B. J.; Voskuil, M.; Fissette, K.; Diels, M.; Driesen, M.; Meehan, C. J.; Yeboah-Manu, D.; Coscolla, M.; Gagneux, S.; Antonio, M.; Schoolnik, G.; Gehre, F.; de Jong, B. C. Tuberculosis 2017 Article
Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages Stucki, D.; Brites, D.; Jeljeli, L.; Coscolla, M.; Liu, Q.; Trauner, A.; Fenner, L.; Rutaihwa, L.; Borrell, S.; Luo ,T.; Gao, Q.; Kato-Maeda, M.; Ballif, M.; Egger, M.; Macedo, R.; Mardassi, H.; Moreno, M.; Vilanova, G. T.; Fyfe, J.; Globan, M.; Thomas, J.; Jamieson, F.; Guthrie, J. L.; Asante-Poku, A.; Yeboah-Manu, D.; Wampande, E.; Ssengooba, W.; Joloba, M.; Boom, W. H.; Basu, I.; Bower, J.; Saraiva, M.; Vasconcellos, S. E.; Suffys, P.; Koch, A.; Wilkinson, R.; Gail-Bekker, L.; Malla, B.; Ley, S. D.; Beck, H. P.; de Jong, B. C.; Toit, K.; Sanchez-Padilla,E.; Bonnet, M.; Gil-Brusola, A.; Frank, M.; Penlap Beng, V. N.; Eisenach, K.; Alani, I.; Ndung'u, P. W.; Revathi, G.; Gehre, F.; Akter, S.; Ntoumi, F.; Stewart-Isherwood, L.; Ntinginya, N. E.; Rachow, A.; Hoelscher, M.; Cirillo, D. M.; Skenders, G.; Hoffner, S.; Bakonyte, D.; Stakenas, P.; Diel, R.; Crudu, V.; Moldovan, O.; Al-Hajoj, S.; Otero, L.; Barletta, F.; Carter, E. J.; Diero, L.; Supply, P.; Comas, I.; Niemann, S.; Gagneux, S. Nature Genetics 2016 Article
M. tuberculosis T cell epitope analysis reveals paucity of antigenic variation and identifies rare variable TB antigens Coscolla, M.; Copin, R.; Sutherland, J.; Gehre, F.; De Jong, B.; Owolabi, O.; Mbayo, G.; Giardina, F.; Ernst, J. D.; Gagneux, S. Cell Host and Microbe 2015 Article
The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex Bentley, S. D.; Comas, I.; Bryant, J. M.; Walker, D.; Smith, N. H.; Harris, S. R.; Thurston, S.; Gagneux, S.; Wood, J.; Antonio, M.; Quail, M. A.; Gehre, F.; Adegbola, R. A.; Parkhill, J.; de Jong, B. C. PLoS Neglected Tropical Diseases 2012 Article-E