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Mobile element evolution playing jigsaw-SINEs in gastropod and bivalve mollusks

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dc.contributor.author Matetovici, I.
dc.contributor.author Sajgo, S.
dc.contributor.author Ianc, B.
dc.contributor.author Ochis, C.
dc.contributor.author Bulzu, P.
dc.contributor.author Popescu, O.
dc.contributor.author Damert, A.
dc.date.accessioned 2016-05-23T13:29:22Z
dc.date.available 2016-05-23T13:29:22Z
dc.date.issued 2016
dc.identifier.issn 1759-6653
dc.identifier.doi http://dx.doi.org/10.1093/gbe/evv257
dc.identifier.other ITG-B1B
dc.identifier.other DBM
dc.identifier.other U-VPROT
dc.identifier.other JIF
dc.identifier.other DOI
dc.identifier.other FTA
dc.identifier.other OAA
dc.identifier.other Abstract
dc.identifier.other UPD62
dc.identifier.uri http://hdl.handle.net/10390/8850
dc.description.abstract SINEs (Short INterspersed Elements) are widely distributed among eukaryotes. Some SINE families are organized in superfamilies characterized by a shared central domain. These central domains are conserved across species, classes, and even phyla. Here we report the identification of two novel such superfamilies in the genomes of gastropod and bivalve mollusks. The central conserved domain of the first superfamily is present in SINEs in Caenogastropoda and Vetigastropoda as well as in all four subclasses of Bivalvia. We designated the domain MESC (Romanian for MElc-snail and SCoica-mussel) because it appears to be restricted to snails and mussels. The second superfamily is restricted to Caenogastropoda. Its central conserved domain-Snail-is related to the Nin-DC domain. Furthermore, we provide evidence that a 40-bp subdomain of the SINE V-domain is conserved in SINEs in mollusks and arthropods. It is predicted to form a stable stem-loop structure that is preserved in the context of the overall SINE RNA secondary structure in invertebrates. Our analysis also recovered short retrotransposons with a Long INterspersed Element (LINE)-derived 5' end. These share the body and/or the tail with transfer RNA (tRNA)-derived SINEs within and across species. Finally, we identified CORE SINEs in gastropods and bivalves-extending the distribution range of this superfamily. en_US
dc.language English en_US
dc.subject Molluscs en_US
dc.subject Gastropods en_US
dc.subject Snails en_US
dc.subject Mussels en_US
dc.subject SINEs en_US
dc.subject Short interspersed elements (SINEs) en_US
dc.subject Arthropods en_US
dc.subject Bivalvia en_US
dc.subject Classification en_US
dc.subject Phylogeny en_US
dc.subject Sequences en_US
dc.subject Transcriptome analysis en_US
dc.title Mobile element evolution playing jigsaw-SINEs in gastropod and bivalve mollusks en_US
dc.type Article en_US
dc.citation.issue 1 en_US
dc.citation.jtitle Genome Biology and Evolution en_US
dc.citation.volume 8 en_US
dc.citation.pages 253-270 en_US
dc.identifier.pmid http://www.ncbi.nlm.nih.gov/pubmed/26739168
dc.citation.jabbreviation Genome Biol Evol en_US


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